../../tmp/servers/virsirnadb/673840467
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| Query | virsi1259 | 1 | gtgtctcttgtctatgtca | 19 | |
| AF177911.1 | Coxsackievirus A16 polyprotein gene, complete cds | 5279 | ................... | 5297 | 100 |
| AY421768.1 | Human coxsackievirus A12 strain Texas-12, complete genome | 5273 | ................... | 5291 | 100 |
| AY790926.1 | Human coxsackievirus A16 strain shzh00-1, complete genome | 5279 | ................... | 5297 | 100 |
| EU262658.1 | Human coxsackievirus A16 strain shzh05-1, complete genome | 5279 | ................... | 5297 | 100 |
| FJ198212.1 | Human coxsackievirus A16 strain GZ08, complete genome | 5279 | ................... | 5297 | 100 |
| U22521.1 | ETU22521 Human enterovirus 71 polyprotein gene, complete cds | 5277 | ...........t....... | 5295 | 94 |
| AY421760.1 | Human coxsackievirus A2 strain Fleetwood, complete genome | 5267 | .................t. | 5285 | 94 |
| AY421764.1 | Human coxsackievirus A6 strain Gdula, complete genome | 5303 | ...........t....... | 5321 | 94 |
| AY421765.1 | Human coxsackievirus A7 strain Parker, complete genome | 5273 | .................t. | 5291 | 94 |
| AB204852.1 | Human enterovirus 71 genomic RNA, complete genome, sub_strain:BrCr-TR | 5277 | ...........t....... | 5295 | 94 |
| AB204853.1 | Human enterovirus 71 genomic RNA, complete genome, sub_strain:BrCr-ts | 5277 | ...........t....... | 5295 | 94 |
| GU434678.1 | Human enterovirus 71 strain EV71-Hubei-09-China, complete genome | 5277 | ...........t....... | 5295 | 94 |
| GQ279368.1 | Human coxsackievirus A16 strain SZ/HK08-3, complete genome | 5279 | .................t. | 5297 | 94 |
| HQ423141.1 | Human coxsackievirus A16 strain KMM/08, complete genome | 5279 | .................t. | 5297 | 94 |
| EF063152.1 | Human enterovirus 71 strain E2005125-TW polyprotein gene, complete cd | 5278 | ..a..c............. | 5296 | 89 |
| GQ279371.1 | Human coxsackievirus A16 strain SZ/HK08-7, complete genome | 5279 | .....c..c.......... | 5297 | 89 |
| HQ269389.1 | Human coxsackievirus A16 isolate XM-CA16-3560, complete genome | 5280 | .....c..c.......... | 5298 | 89 |
| AB180070.1 | Human poliovirus 1 gene for polyprotein, complete cds, isolate:Mindan | 6399 | .............g.t.__ | 6383 | 78 |
| AB180071.1 | Human poliovirus 1 gene for polyprotein, complete cds, isolate:Luzon- | 6399 | .............g.t.__ | 6383 | 78 |
| AB180072.1 | Human poliovirus 1 gene for polyprotein, complete cds, isolate:Luzon- | 6399 | .............g.t.__ | 6383 | 78 |
| AB180073.1 | Human poliovirus 1 gene for polyprotein, complete cds, isolate:Luzon- | 6399 | .............g.t.__ | 6383 | 78 |
| AF499637.1 | Human coxsackievirus A13 strain Flores, complete genome | 5350 | _____.g............ | 5363 | 68 |
| AF465511.1 | Human coxsackievirus A13 strain Flores, complete genome | 5350 | _____.g............ | 5363 | 68 |
| AY773285.1 | Human enterovirus 90 isolate F950027, complete genome | 6089 | __...........t..___ | 6076 | 68 |
| V01148.1 | Genome of human poliovirus type 1 (Mahoney strain). (One of two versi | 5329 | _______............ | 5340 | 63 |
| V01150.1 | Human poliovirus strain Sabin 1 complete genome, strain Sabin 1 | 5334 | _______............ | 5345 | 63 |
| AJ132960.1 | Human poliovirus 1, complete genome. Isolated from faeces of immunode | 5335 | _______............ | 5346 | 63 |
| AJ416942.1 | Human poliovirus 1 genomic RNA for polyprotein, strain CHAT 10A-11 | 5334 | _______............ | 5345 | 63 |
| AJ430385.1 | Human poliovirus 1 genomic RNA for polyprotein gene, strain Cox | 5334 | _______............ | 5345 | 63 |
| AY184219.1 | Human poliovirus 1 strain Sabin 1, complete genome | 5334 | _______............ | 5345 | 63 |
| AY278552.1 | Human poliovirus 2 isolate P2S/Mog65-2 (20077), complete genome | 5333 | _______............ | 5344 | 63 |
| AF538841.1 | Human poliovirus 1 isolate TCDC01-113, complete genome | 5334 | _______............ | 5345 | 63 |
| AF538842.1 | Human poliovirus 1 isolate TCDC01-330, complete genome | 5326 | _______............ | 5337 | 63 |
| AF538843.1 | Human poliovirus 1 isolate TCDC01-861, complete genome | 5326 | _______............ | 5337 | 63 |
| AY928383.1 | Human poliovirus 1 isolate d261-2002037607 polyprotein gene, complete | 5326 | _______............ | 5337 | 63 |
| AY928384.1 | Human poliovirus 1 isolate d224-2002037606 polyprotein gene, complete | 5326 | _______............ | 5337 | 63 |
| AY928385.1 | Human poliovirus 1 isolate d054-2002037604 polyprotein gene, complete | 5326 | _______............ | 5337 | 63 |
| AY928386.1 | Human poliovirus 1 isolate d179-2002037605 polyprotein gene, complete | 5326 | _______............ | 5337 | 63 |
| AY928387.1 | Human poliovirus 1 isolate d018-2002037602 polyprotein gene, complete | 5326 | _______............ | 5337 | 63 |
| AY948201.1 | Human poliovirus 2 isolate CHN1025 polyprotein gene, complete cds | 5334 | _______............ | 5345 | 63 |
| EF682343.1 | Human poliovirus 1 strain USA10774 polyprotein gene, complete cds | 5308 | _______............ | 5319 | 63 |
| EF682344.1 | Human poliovirus 1 strain USA10775 polyprotein gene, complete cds | 5308 | _______............ | 5319 | 63 |
| EF682345.1 | Human poliovirus 1 strain USA10773 polyprotein gene, complete cds | 5308 | _______............ | 5319 | 63 |
| EF682346.1 | Human poliovirus 1 strain USA10780 polyprotein gene, complete cds | 5308 | _______............ | 5319 | 63 |
| EF682347.1 | Human poliovirus 1 strain USA10781 polyprotein gene, complete cds | 5308 | _______............ | 5319 | 63 |
| EF682348.1 | Human poliovirus 1 strain USA10782 polyprotein gene, complete cds | 5308 | _______............ | 5319 | 63 |
| EF682349.1 | Human poliovirus 1 strain USA10771 polyprotein gene, complete cds | 5308 | _______............ | 5319 | 63 |
| EF682350.1 | Human poliovirus 1 strain USA10772 polyprotein gene, complete cds | 5308 | _______............ | 5319 | 63 |
| EF682351.1 | Human poliovirus 1 strain USA10778 polyprotein gene, complete cds | 5308 | _______............ | 5319 | 63 |
| EF682352.1 | Human poliovirus 1 strain USA10770 polyprotein gene, complete cds | 5308 | _______............ | 5319 | 63 |
| EF682353.1 | Human poliovirus 1 strain USA10777 polyprotein gene, complete cds | 5308 | _______............ | 5319 | 63 |
| EF682354.1 | Human poliovirus 1 strain USA10779 polyprotein gene, complete cds | 5308 | _______............ | 5319 | 63 |
| EF682355.1 | Human poliovirus 1 strain USA10776 polyprotein gene, complete cds | 5308 | _______............ | 5319 | 63 |
| EF682356.1 | Human poliovirus 1 strain USA10784, complete genome | 5334 | _______............ | 5345 | 63 |
| EF682357.1 | Human poliovirus 1 strain USA10785, complete genome | 5334 | _______............ | 5345 | 63 |
| EF682358.1 | Human poliovirus 1 strain USA10783, complete genome | 5334 | _______............ | 5345 | 63 |
| EF682359.1 | Human poliovirus 1 strain USA10786, complete genome | 5334 | _______............ | 5345 | 63 |
| EU794953.1 | Human poliovirus 1 isolate A21 polyprotein gene, complete cds | 5286 | _______............ | 5297 | 63 |
| EU794954.1 | Human poliovirus 1 isolate A49 polyprotein gene, complete cds | 5286 | _______............ | 5297 | 63 |
| EU794955.1 | Human poliovirus 1 isolate A63 polyprotein gene, complete cds | 5286 | _______............ | 5297 | 63 |
| EU794956.1 | Human poliovirus 1 isolate A84 polyprotein gene, complete cds | 5286 | _______............ | 5297 | 63 |
| EU794957.1 | Human poliovirus 1 isolate A88 polyprotein gene, complete cds | 5286 | _______............ | 5297 | 63 |
| EU794958.1 | Human poliovirus 1 isolate A91 polyprotein gene, complete cds | 5286 | _______............ | 5297 | 63 |
| EU794959.1 | Human poliovirus 1 isolate A102 polyprotein gene, complete cds | 5286 | _______............ | 5297 | 63 |
| EU794960.1 | Human poliovirus 1 isolate A105 polyprotein gene, complete cds | 5286 | _______............ | 5297 | 63 |
| EU794961.1 | Human poliovirus 1 isolate A118 polyprotein gene, complete cds | 5286 | _______............ | 5297 | 63 |
| EU794962.1 | Human poliovirus 1 isolate A199 polyprotein gene, complete cds | 5286 | _______............ | 5297 | 63 |
| EU794963.1 | Human poliovirus 1 isolate A449 polyprotein gene, complete cds | 5286 | _______............ | 5297 | 63 |
| EU794964.1 | Human poliovirus 1 isolate A649 polyprotein gene, complete cds | 5286 | _______............ | 5297 | 63 |
| FJ769378.1 | Human poliovirus 1 strain CHN8184/GZ/CHN/2004, complete genome | 5334 | _______............ | 5345 | 63 |
| FJ769379.1 | Human poliovirus 1 strain CHN8229-1/GZ/CHN/2004, complete genome | 5334 | _______............ | 5345 | 63 |
| FJ769380.1 | Human poliovirus 1 strain CHN8229-2/GZ/CHN/2004, complete genome | 5334 | _______............ | 5345 | 63 |
| FJ769381.1 | Human poliovirus 1 strain CHN8229-3/GZ/CHN/2004, complete genome | 5334 | _______............ | 5345 | 63 |
| FJ769382.1 | Human poliovirus 1 strain CHN8233c/GZ/CHN/2004, complete genome | 5334 | _______............ | 5345 | 63 |
| FJ769383.1 | Human poliovirus 1 strain CHN8225c/GZ/CHN/2004, complete genome | 5334 | _______............ | 5345 | 63 |
| FJ769384.1 | Human poliovirus 1 strain CHN8248c/GZ/CHN/2004, complete genome | 5334 | _______............ | 5345 | 63 |
| FJ769385.1 | Human poliovirus 1 strain CHN8264c/GZ/CHN/2004, complete genome | 5334 | _______............ | 5345 | 63 |
| FJ859058.1 | Human poliovirus 1 isolate 10050, complete genome | 5334 | _______............ | 5345 | 63 |
| FJ859059.1 | Human poliovirus 1 isolate 10086c, complete genome | 5334 | _______............ | 5345 | 63 |
| FJ859060.1 | Human poliovirus 1 isolate 10091c, complete genome | 5334 | _______............ | 5345 | 63 |
| FJ859061.1 | Human poliovirus 1 isolate 10092c, complete genome | 5334 | _______............ | 5345 | 63 |
| FJ859062.1 | Human poliovirus 1 isolate 10094c, complete genome | 5334 | _______............ | 5345 | 63 |
| FJ859063.1 | Human poliovirus 1 isolate 10095c, complete genome | 5334 | _______............ | 5345 | 63 |
| FJ859064.1 | Human poliovirus 1 isolate 10097c, complete genome | 5334 | _______............ | 5345 | 63 |
| AF499641.1 | Human coxsackievirus A19 strain 8663, complete genome | 6366 | ..a..........g.t.__ | 6350 | 73 |
| AF499643.1 | Human coxsackievirus A22 strain Chulman, complete genome | 6363 | ...........t.g.t.__ | 6347 | 73 |
| AF111983.3 | Human poliovirus 1 isolate CHN-Henan/91-3, complete genome | 4254 | _.........c..g..___ | 4240 | 68 |
| AF499635.1 | Human coxsackievirus A1 strain Tompkins, complete genome | 6353 | ...........t.______ | 6341 | 63 |
| AY421766.1 | Human coxsackievirus A8 strain Donovan, complete genome | 6426 | _____...........g._ | 6414 | 63 |
| EF667343.1 | Simian enterovirus 46 strain RNM5, complete genome | 7159 | ..........g..______ | 7171 | 63 |
| EF667344.1 | Human enterovirus 92 strain RJG7, complete genome | 7143 | ..........g..______ | 7155 | 63 |